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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: TRDN_RAT
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.82
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEITAEGNA SITTTVIDNK NGSVPKSPGK VLKRTVTEDI VTTFSSPAAW LLVIALIITW  60
   61 SAVAIVMFDL VDYKNFSASS IAKIGSDPLK LVNDAVEETT DWIYGFFSLL SDIISSDGDE 120
  121 DDEDADEDID KGEIEEPPLK RKEIQKEKAE KQEKPEKKIQ TKVSHREKEK GKEKLKGEKP 180
  181 EKKATHKEKL EKKERTETKM AAKEDKKIKT KEKTEEKAKK EMKVGKQEKA KPAAAKAKET 240
  241 PKTTPKAREK DDKETPAVPK HEQKDQYAFC RYMIDMFVHG DLKPGQSPAV PPPSLTASRP 300
  301 ALSTPSLEEK EKEEKKKVEK KVTSDTKKKE KGEAKKKSEK ETVIDGKGKE PGKPPETKQT 360
  361 TTKLTTQAAA TKDEKKEDSK KMKKPPEEKP KGKKQEKKEK HIEPAKTPKK EHPAPSEKHR 420
  421 KAKAEQAKEE IAPASTKKAL HGKKEEKAKT VEQGKDVKPK LPQPQLKKEE KSEPQPKKEV 480
  481 KLETQLKKEE KSEPQVKKEA KLASSEKGQT RKQNITRPEQ VIPHGKPEQK VPKQIKAITA 540
  541 EKTEKAERQE KYHPSIKTEG KPEVTDSGKK KIEKPEKESK VPPKQENLQV RNVTRAEKRG 600
  601 KISKDSKDAP APKKDKDSKD VLHSKKDKEV TNNVSSPKKQ KSPISFFQCV YLDGYNGYGF 660
  661 QFPVTPVQHS GENPGKSNSP GQKQQEQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle