YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TXTP_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPRAPRAL TAAAPGSGKA KLTHPGKAIL AGGLAGGIEI CITFPTEYVK TQLQLDERAN  60
   61 PPRYRGIGDC VRQTVRSHGV LGLYRGLSSL LYGSIPKAAV RFGMFEFLSN HMRDAQGRLD 120
  121 SRRGLLCGLG AGVAEAVVVV CPMETVKVKF IHDQTSSNPK YRGFFHGVRE IVREQGLKGT 180
  181 YQGLTATVLK QGSNQAIRFF VMTSLRNWYQ GDNPNKPMNP LITGVFGAVA GAASVFGNTP 240
  241 LDVIKTRMQG LEAHKYRNTL DCGVQILKNE GPKAFYKGTV PRLGRVCLDV AIVFVIYDEV 300
  301 VKLLNKVWKT D

Type	Start	End	Confidence
Signal Peptide	1	20	0.61
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	311	0.87