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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: TRPC1_RAT
Protein type: Transmembrane
Type Confidence: 0.91
Topology Confidence: 0.71
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMAALYPSTD LSGVSSSSLP SSPSSSSPNE VMALKDVREV KEENTLNEKL FLLACDKGDY  60
   61 YMVKKILEEN SSGDLNINCV DVLGRNAVTI TIENESLDIL QLLLDYGCQK LMERIQNPEY 120
  121 STTMDVAPVI LAAHRNNYEI LTMLLKQDVA LPKPHAVGCE CTLCSAKNKK DSLRHSRFRL 180
  181 DIYRCLASPA LIMLTEEDPI LRAFELSADL KELSLVEVEF WNDYEELARQ CKMFAKDLLA 240
  241 QARNSRELEV ILNHTSSDEP LDKRGLLEER MNLSRLKLAI KYNQKEFVSQ SNCQQFLNTV 300
  301 WFGQMSGYRR KPTCKKIMTV LTVGIFWPVL SLCYLIAPKS QFGRIIHTPF MKFIIHGASY 360
  361 FTFLLLLNLY SLVYNEDKKN TMGPALERID YLLILWIIGM IWSDIKRLWY EGLEDFLEES 420
  421 RNQLSFVMNS LYLATFALKV VAHNKFHDFA DRKDWDAFHP TLVAEGLFAF ANVLSYLRLF 480
  481 FMYTTSSILG PLQISMGQML QDFGKFLGMF LLVLFSFTIG LTQLYDKGYT SKEQKDCVGI 540
  541 FCEQQSNDTF HSFIGTCFAL FWYIFSLAHV AIFVTRFSYG EELQSFVGAV IVGTYNVVVV 600
  601 IVLTKLLVAM LHKSFQLIAN HEDKEWKFAR AKLWLSYFDD KCTLPPPFNI IPSPKTICYM 660
  661 ISSLSKWVCS HTSKGKVRRQ NSLKEWRNLK QKRDENYQKV MCCLVHRYLT SMRQKMQSTD 720
  721 QATVENLNEL RQDLSKFRNE IRDLLGFRTS KYAMFYPKN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle