YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCNS1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSEFPGPGS RVPWRPRDEA LRVNVGGVRR LLSARALARF PGTRLGRLQA AVSEEQARRL  60
   61 CDDYDAAARE FYFDRHPGFF LGLLHFYRTG HLHVLDELCV FAFGQEADYW GLGENALATC 120
  121 CRARYLERRV TRPRAWDEDS DAPSSVDPCP DEISDVQREL ARYGAARCGR LRRRLWLTME 180
  181 NPGYSLPSKL FSCVSIGVVL ASIAAMCIHS LPEYQAREAA AAVAAVAAGR SAEDVRDDPV 240
  241 LRRLEYFCIA WFSFEVSSRL LLAPSTRNFF CHPLNLIDIV SVLPFYLTLL AGAALGDRRG 300
  301 ASGEELGDLG KVVQVFRLMR IFRVLKLARH STGLRSLGAT LKHSYREVGI LLLYLAVGVS 360
  361 VFSGVAYTAE EKNVGFDTIP ACWWWGTVSM TTVGYGDVVP ETVAGKLAAS GCILGGILVV 420
  421 ALPITIIFNK FSHFYRRQKA LEAAVRSSGQ REFEDLLSSV DGVSDVSLET SRETSQEGRS 480
  481 TDLETQAPSE PAKSHSY

Type	Start	End	Confidence
Cytoplasmic	1	189	0.59
Transmembrane Helix	190	209	0.69
Non-Cytoplasmic	210	273	0.53
Transmembrane Helix	274	295	0.71
Cytoplasmic	296	347	0.66
Transmembrane Helix	348	369	0.89
Non-Cytoplasmic	370	406	0.54
Transmembrane Helix	407	428	0.95
Cytoplasmic	429	497	0.76