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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|2292986, gi|1...
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGWVQRVLP QPPGTPQKTE EGAGPQPETE SKPEANPQPE PEVQPEPEPE PEPEPEPEPA  60
   61 PEEAAPEVQT LPPEEPVEGE DVAEAGPSLQ ETQEADPPQP TSQAQVAVVK VNRPSSWMLS 120
  121 WFWKGMEKVV PQPVYSSSGG QNLAAGEGGP DQDGAQTLEP CGTGDPGSED GSDKTSKTQD 180
  181 TEPSLWLLRW LELNLEKVLP QPPTPSQAWK VEPEGAVLEP DPPGTPMEVE PTENPSQPNP 240
  241 GPVEPEEEPA AEPQPGFQAS SLPPPGDPVR LIEWLLHRLE MALPQPVLHG KAAEQEPSCP 300
  301 GTCDVQTISI LPVEQAEHDL VLEDVDSCWE DTQQEDGASL QETELAPIYE DESEAMVEMP 360
  361 RELPQIQEQQ EEENEEKEEE EEEKEEKEEK EEEEEKEEEE KREEEKKKEK EEEKKEKEEE 420
  421 ENGEEEEKEE KEEKEEEEGK EEKEEKEEKE EKEEEEKEEK EEEEKEEKEE EEEEEEEEEE 480
  481 EEPIVLLDSC LVVQADVDQC QLERAQPETA SIQELPEEEE EKEEEKKEEE EEKEEEEEKE 540
  541 EEEEKEEEGE ATNSTVPATK EHPELQVEDT DAEAGPLIPE ETIPPPERPP VSPAKSDTLA 600
  601 VPSAATHRKK LPSQDDEAEE LKALSPAESP VVAWSDPTTP QEADGEDRAA STASQNSAII 660
  661 NDRLQELVKM FKERTEKVKE KLIDPDVTSD EESPKPSPAK KAPDSAPAQK PAEAEAAEEE 720
  721 HYCDMLCCKF KRRPWKMYQF PQSIDPLTNL MYILWLFFVV LAWNWNCWLI PVRWAFPYQR 780
  781 ADNIHLWLLM DYLCDFIYLL DITVFQMRLQ FVKGGDIITD KKEMRNNYLK SQRFKMDLLC 840
  841 LLPLDFLYLK LGVNPLLRLP RCLKYMAFFE FNNRLEAILS KAYVYRVIRT TAYLLYSLHL 900
  901 NSCLYYWASA FQGIGSTHWV YDGVGNSYIR CYYWAVKTLI TIGGLPDPQT LFEIVFQLLN 960
  961 YFTGVFAFSV MIGQMRDVVG AATAGQTYYR SCMDSTVKYM NFYKIPRSVQ NRVKTWYEYT1020
 1021 WHSQGMLDES ELMVQLPDKM RLDLAIDVNY NIVSKVALFQ GCDRQMIFDM LKRLRSVVYL1080
 1081 PNDYVCKKGE IGREMYIIQA GQVQVLGGPD GKAVLVTLKA GSVFGEISLL AVGGGNRRTA1140
 1141 NVVAHGFTNL FILDKKDLNE ILVHYPESQK LLRKKARRML RNNNKPKEEK SVLILPPRAG1200
 1201 TPKLFNAALA AAGKMGPRGA KGGKLAHLRA RLKELAALEA AARQQQLLEQ AKSSQEAGGE1260
 1261 EGSGATDQPA PQEPSEPKEP PEPPAPSSPP PASAKPEGST EEAAGPPEPS VRIRVSPGPD1320
 1321 PGEQTLSVEM LEEKKEEVE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle