YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BHE41_RAT
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEGIPHLQE RQLLEHRDFI GLDYSSLYMC KPKRSLKRDD TKDTYKLPHR LIEKKRRDRI  60
   61 NECIAQLKDL LPEHLKLTTL GHLEKAVVLE LTLKHLKALT ALTEQQHQKI IALQNGERSL 120
  121 KSPVQADLDA FHSGFQTCAK EVLQYLARFE SWTPREPRCA QLVSHLHAVA TQLLTPQVTP 180
  181 GRGPGRAPCS AGAAAASGSE RVARCVPVIQ RTQPGTEPEH DTDTDSGYGG EAEQGRAAVK 240
  241 QEPPGDPSAA PKRLKLEARG ALLGPEPALL GSLVALGGGA PFAQPAAAPF CLPFYLLSPS 300
  301 AAAYVQPWLD KSGLDKYLYP AAAAPFPLLY PGIPAAAAAA AAAAFPCLSS VLSPPPEKAG 360
  361 SAAGAPFLAH EVAPPGSLRP QHAHSRTHLP HAVNPESSQE DATQPAKDAP

Type	Start	End	Confidence
Cytoplasmic	1	261	0.87
Transmembrane Helix	262	283	0.70
Non-Cytoplasmic	284	327	0.61
Transmembrane Helix	328	352	0.73
Cytoplasmic	353	410	0.61