YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HYAS2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHCERFLCVL RIIGTTLFGV SLLLGITAAY IVGYQFIQTD NYYFSFGLYG AFLASHLIIQ  60
   61 SLFAFLEHRK MKKSLETPIK LNKTVALCIA AYQEDPDYLR KCLQSVKRLT YPGIKVVMVI 120
  121 DGNSDDDLYM MDIFSEVMGR DKSVTYIWKN NFHERGPGET EESHKESSQH VTQLVLSNKS 180
  181 ICIMQKWGGK REVMYTAFRA LGRSVDYVQV CDSDTMLDPA SSVEMVKVLE EDPMVGGVGG 240
  241 DVQILNKYDS WISFLSSVRY WMAFNIERAC QSYFGCVQCI SGPLGMYRNS LLHEFVEDWY 300
  301 NQEFMGNQCS FGDDRHLTNR VLSLGYATKY TARSKCLTET PIEYLRWLNQ QTRWSKSYFR 360
  361 EWLYNAMWFH KHHLWMTYEA VITGFFPFFL IATVIQLFYR GKIWNILLFL LTVQLVGLIK 420
  421 SSFASCLRGN IVMVFMSLYS VLYMSSLLPA KMFAIATINK AGWGTSGRKT IVVNFIGLIP 480
  481 VSVWFTILLG GVIFTIYKES KKPFSESKQT VLIVGTLIYA CYWVVLLTLY VVLINKCGRR 540
  541 KKGQQYDMVL DV

Type	Start	End	Confidence
Cytoplasmic	1	8	0.92
Transmembrane Helix	9	32	0.89
Non-Cytoplasmic	33	44	0.80
Transmembrane Helix	45	66	0.92
Cytoplasmic	67	373	0.86
Transmembrane Helix	374	398	0.85
Non-Cytoplasmic	399	402	0.46
Transmembrane Helix	403	424	0.77
Cytoplasmic	425	428	0.35
Transmembrane Helix	429	443	0.69
Non-Cytoplasmic	444	444	0.02
Transmembrane Helix	445	459	0.63
Cytoplasmic	460	470	0.55
Transmembrane Helix	471	496	0.86
Non-Cytoplasmic	497	510	0.57
Transmembrane Helix	511	534	0.89
Cytoplasmic	535	552	0.60