YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27716275, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.43
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESGSRPSLG QVILLGTSSM VTAVLYSIYR QKAQVAQELK GAKKIHLGED LKAILSEAPG  60
   61 KCVPYAVIEG AVRSVKETLN SQFVENCKGV IQRLTLQEHK MVWNRTTHLW NDYSKIIHQR 120
  121 TNTVPFDLVP HEDGVAMAVR VLKPLDSVDL GLETVYEKFH PSVQSFTDAI GHYISGERPK 180
  181 GVQETEEMLK VGATLTGIGE LVLDNNSVRL QPPKQGMQYY LSSQDFDSLL HRQESSVRLW 240
  241 KVLVLVFGFA TCATLFFILR KQYLQRQERL RQQQLQDEFL EHEAHLLSQA SPEDRESLKS 300
  301 ACVVCLSNFK SCVFLECGHV CSCRQCYLAL PEPKRCPICR RGITRVIPLY NS

Type	Start	End	Confidence
Signal Peptide	1	23	0.44
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	238	0.74
Transmembrane Helix	239	259	0.95
Cytoplasmic	260	352	0.73