YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LYSM3_RAT
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGRNQNRTA SLAGIQASGH VHTFGNCTDN DMLEEDAEVY ELRSRGKEKV RRSTSRDRLD  60
   61 DIVILTKDIQ EGDTLNAVAL QYCCTVADIK RVNNLISDQD FFALRSIKIP VKRFSSLTET 120
  121 LHPLKGRQVL HPPPVPYFQE QDTVPANDSP SSSESAGSFL KEVDRDIEQI VKCTDTKKEN 180
  181 LNEVVSALTA QQVRFEPDNK SVHRKDPYYG ADWGMGWWTA VVIMLIVGII TPVFYLLYYE 240
  241 ILAKVDVSHH STVDSSHLHP GLTPPSHHRE MGNAIGPTKG IPVGQQDDHR LYRQDPQARD 300
  301

Type	Start	End	Confidence
Cytoplasmic	1	213	0.66
Transmembrane Helix	214	238	0.84
Non-Cytoplasmic	239	300	0.71