YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|215416000, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTQGPPKRL LGSLNSTSIT TSHLGLATNQ TGSWCLHVSI PDGLFLSLGL VSLVENVLVV  60
   61 VAITKNRNLH SPMYYFICCL ALSDLMVSVS IVLETTIILL LEAGILVARA ALVQQLDNVI 120
  121 DVLICGSMVS SLCFLGVIAI DRYISIFYAL RYHSIVTLSR ARRAVVGIWV VSIVSSTLFI 180
  181 TYYKHTAVLL CLVTFFLAML ALMAILYVHM LSRACQHAQG IARLHKRRHS IRQGFCLKGA 240
  241 ATLTILLGIF FLCWAPFFLH LLLIVLCPQH PTCSCIFKNF NLFLILIILS SIVDPLIYAF 300
  301 RSQELRMTLK EVLLCSW

Type	Start	End	Confidence
Cytoplasmic	1	9	0.74
Transmembrane Helix	10	27	0.62
Non-Cytoplasmic	28	42	0.68
Transmembrane Helix	43	64	0.86
Cytoplasmic	65	73	0.87
Transmembrane Helix	74	98	0.84
Non-Cytoplasmic	99	119	0.81
Transmembrane Helix	120	144	0.87
Cytoplasmic	145	163	0.88
Transmembrane Helix	164	183	0.92
Non-Cytoplasmic	184	188	0.74
Transmembrane Helix	189	211	0.90
Cytoplasmic	212	233	0.93
Transmembrane Helix	234	258	0.89
Non-Cytoplasmic	259	279	0.84
Transmembrane Helix	280	300	0.92
Cytoplasmic	301	317	0.95