YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TNR1A_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLPIVPGLL LSLVLLALLM GIHPSGVTGL VPSLGDREKR DNLCPQGKYA HPKNNSICCT  60
   61 KCHKGTYLVS DCPSPGQETV CEVCDKGTFT ASQNHVRQCL SCKTCRKEMF QVEISPCKAD 120
  121 MDTVCGCKKN QFQRYLSETH FQCVDCSPCF NGTVTIPCKE KQNTVCNCHA GFFLSGNECT 180
  181 PCSHCKKNQE CMKLCLPPVA NVTNPQDSGT AVLLPLVIFL GLCLLFFICI SLLCRYPQWR 240
  241 PRVYSIICRD SAPVKEVEGE GIVTKPLTPA SIPAFSPNPG FNPTLGFSTT PRFSHPVSST 300
  301 PISPVFGPSN WHNFVPPVRE VVPTQGADPL LYGSLNPVPI PAPVRKWEDV VAAQPQRLDT 360
  361 ADPAMLYAVV DGVPPTRWKE FMRLLGLSEH EIERLELQNG RCLREAHYSM LEAWRRRTPR 420
  421 HEATLDVVGR VLCDMNLRGC LENIRETLES PAHSSTTHLP R

Type	Start	End	Confidence
Signal Peptide	1	29	0.94
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	210	0.99
Transmembrane Helix	211	234	0.90
Cytoplasmic	235	461	0.97