YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GBRA2_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTKLSTCNV WFPLLVLLVW NPARLVLANI QEDEAKNNIT IFTRILDRLL DGYDNRLRPG  60
   61 LGDSITEVFT NIYVTSFGPV SDTDMEYTID VFFRQKWKDE RLKFKGPMNI LRLNNSMASK 120
  121 IWTPDTFFHN GKKSVAHNMT MPNKLLRIQD DGTLLYTMRL TVQAECPMHL EDFPMDAHSC 180
  181 PLKFGSYAYT TSEVTYIWTY NPSDSVQVAP DGSRLNQYDL LGQSIGKETI KSSTGEYTVM 240
  241 TAHFHLKRKI GYFVIQTYLP CIMTVILSQV SFWLNRESVP ARTVFGVTTV LTMTTLSISA 300
  301 RNSLPKVAYA TAMDWFIAVC YAFVFSALIE FATVNYFTKR GWAWDGKSVV NDKKKEKGSV 360
  361 MIQNNAYAVA VANYAPNLSK DPVLSTISKS ATTPEPNKKP ENKPAEAKKT FNSVSKIDRM 420
  421 SRIVFPVLFG TFNLVYWATY LNREPVLGVS P

Type	Start	End	Confidence
Signal Peptide	1	28	0.97
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	251	0.99
Transmembrane Helix	252	273	0.89
Cytoplasmic	274	282	0.74
Transmembrane Helix	283	300	0.93
Non-Cytoplasmic	301	314	0.74
Transmembrane Helix	315	337	0.88
Cytoplasmic	338	422	0.96
Transmembrane Helix	423	440	0.90
Non-Cytoplasmic	441	451	0.86