YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GBRG1_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.89
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSGKVFLFS PSLLWSQTRG VRLIFLLLTL HLGNCIDKAD DEDDEDLTMN KTWVLAPKIH  60
   61 EGDITQILNS LLQGYDNKLR PDIGVRPTVI ETDVYVNSIG PVDPINMEYT IDIIFAQTWF 120
  121 DSRLKFNSTM KVLMLNSNMV GKIWIPDTFF RNSRKSDAHW ITTPNRLLRI WSDGRVLYTL 180
  181 RLTINAECYL QLHNFPMDEH SCPLEFSSYG YPKNEIEYKW KKPSVEVADP KYWRLYQFAF 240
  241 VGLRNSTEIS HTISGDYIIM TIFFDLSRRM GYFTIQTYIP CILTVVLSWV SFWINKDAVP 300
  301 ARTSLGITTV LTMTTLSTIA RKSLPKVSYV TAMDLFVSVC FIFVFAALME YGTLHYFTSN 360
  361 NKGKTTRDRK LKSKTSVSPG LHAGSTLIPM NNISMPQGED DYGYQCLEGK DCATFFCCFE 420
  421 DCRTGSWREG RIHIRIAKID SYSRIFFPTA FALFNLVYWV GYLYL

Type	Start	End	Confidence
Signal Peptide	1	20	0.89
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	271	0.93
Transmembrane Helix	272	293	0.92
Cytoplasmic	294	300	0.77
Transmembrane Helix	301	320	0.85
Non-Cytoplasmic	321	331	0.68
Transmembrane Helix	332	354	0.84
Cytoplasmic	355	440	0.90
Transmembrane Helix	441	462	0.88
Non-Cytoplasmic	463	465	0.78