YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPYA_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRMLAKASV TLGSRAASWV RNMGSHQLLV PPPEALSKPL SIPKRLLLGP GPSNLAPRVL  60
   61 AAGSLRMIGH MQKEMFQIMD EIKQGIQYVF QTRNPLTLVV SGSGHCAMET ALFNLLEPGD 120
  121 SFLVGTNGIW GIRAAEIAER IGARVHQMIK KPGEHYTLQE VEEGLAQHKP VLLFLTHGES 180
  181 STGVLQPLDG FGELCHRYQC LLLVDSVASL GGVPIYMDQQ GIDILYSGSQ KVLNAPPGIS 240
  241 LISFNDKAKS KVYSRKTKPV SFYTDITYLS KLWGCEGKTR VIHHTLPVIS LYCLRESLAL 300
  301 ISEQGLENSW RRHREATAHL HKCLRELGLK FFVKDPEIRL PTITTVTVPA GYNWRDIVSY 360
  361 VLDHFNIEIS GGLGPSEDKV LRIGLLGYNA TTENADRVAE ALREALQHCP KNKL

Type	Start	End	Confidence
Signal Peptide	1	16	0.74
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	414	0.99