YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ITM2B_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKVTFNSAL AQKEAKKDEP KSSEEALIAP PDAVAVDCKD PDDVVPVGQR RAWCWCMCFG  60
   61 LAFMLAGVIL GGAYLYKYFA LQPDDVYYCG LKYIKDDVIL SEPSADAPAA RYQTIEENIK 120
  121 IFEEDAVEFI SVPVPEFADS DPANIVHDFN KKLTAYLDLN LDKCYVIPLN TSIVMPPRNL 180
  181 LELLINIKAG TYLPQSYLIH EHMVITDRIE NVDHLGFFIY RLCHDKETYK LQRRETIRGI 240
  241 QKREASNCFT IRHFENKFAV ETLICS

Type	Start	End	Confidence
Cytoplasmic	1	52	0.96
Transmembrane Helix	53	76	0.89
Non-Cytoplasmic	77	266	0.97