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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CA2D1_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.74
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGCLLALT LTLFQSWLIG PSSEEPFPSP VTIKSWVDKM QEDLVTLAKT ASGVTQLADI  60
   61 YEKYQDLYTV EPNNARQLVE IAARDIEKLL SNRSKALVRL AMEAEKVQAA HQWREDFASN 120
  121 EVVYYNAKDD LDPERNESES GSQRIKPVFI EDANFGRQIS YQHAAVHIPT DIYEGSTIVL 180
  181 NELNWTSALD EVFKRNRDED PTLLWQVFAA DRLARYYPAS PWVDNSRTPN KIDLYDVRRR 240
  241 PWYIQGAASP KDMLILVDVS GSVSGLTLKL IRTSVSEMLE TLSDDDFVNV ASFNSNAQDV 300
  301 SCFQHLVQAN VRNKKVLKDA VNNITAKGIT DYKKGFTFAF EQLLNYNVSR ANCNKIIMLF 360
  361 TDGGEERAQE IFAKYNKDKK VRVFTFSVGQ HNYDRGPIQW MACENKGYYY EIPSIGAIRI 420
  421 NTQEYLDVLG RPMVLAGDKA KQVQWTNVYL DALELGLVIT GTLPVFNVTG QSENKTNLKN 480
  481 QLILGVMGVD VSLEDIKRLT PRFTLCPNGY YFAIDPNGYV LLHPNLQPKN PKSQEPVTLD 540
  541 FLDAELENDI KVEIRNKMID GESGEKTFRT LVKSQDERYI DKGNRTYTWT PVNGTDYRYL 600
  601 ALVLPTYSFY YIKAKIEETI TQARSKKGKM KDSETLKPDN FEESGYTFIA PREYCNDLKP 660
  661 SDNNTEFLLN FNEFIDRKTP NNPSCNTDLI NRILLDAGFT NELVQNYWSK QKNIKGVKAR 720
  721 FVVTDGGITR VYPKEAGENW QENPETYEDS FYKRSLDNDN YVFTAPYFNK SGPGAYESGI 780
  781 MVSKAVELYI QGKLLKPAVV GIKIDVNSWI ENFTKTSIRD PCAGPVCDCK RNSDVMDCVI 840
  841 LDDGGFLLMA NHDDYTNQIG RFFGEIDPRM MRHLVNISLY AFNKSYDYQS VCDPGAAPKQ 900
  901 GAGHRSAYVP SITDILQIGW WATAAAWSIL QQLLLSLTFP RLLEAVEMEE DDFTASLSKQ 960
  961 SCITEQTQYF FKNDTKSFSG LLDCGNCSRI FHVEKLMNTN LVFIMVESKG TCPCDTRLLM1020
 1021 QAEQTSDGPD PCDMVKQPRY RKGPDVCFDN NVLEDYTDCG GVSGLNPSLW SIFGLQFILL1080
 1081 WLVSGSRHYL W

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle