YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GP182_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVIPSSRPV STLAPDNDFR EIHNWTELLH LFNQTFSDCH MELNENTKQV VLFVFYLAIF  60
   61 VVGLVENVLV ICVNCRRSGR VGMLNLYILN MAVADLGIIL SLPVWMLEVM LEYTWLWGSF 120
  121 SCRFIHYFYL ANMYSSIFFL TCLSIDRYVT LTNTSPSWQR HQHRIRRAVC AGVWVLSAII 180
  181 PLPEVVHIQL LDGSEPMCLF LAPFETYSAW ALAVALSATI LGFLLPFPLI AVFNILSACR 240
  241 LRRQGQTESR RHCLLMWAYI VVFVICWLPY HVTMLLLTLH TTHIFLHCNL VNFLYFFYEI 300
  301 IDCFSMLHCV ANPILYNFLS PSFRGRLLSL VVRYLPKEQA RAAGGRASSS SSTQHSIIIT 360
  361 KEGSLPLQRI CTPTPSETCR PPLCLRTPHL HSAIP

Type	Start	End	Confidence
Non-Cytoplasmic	1	51	0.92
Transmembrane Helix	52	73	0.88
Cytoplasmic	74	85	0.81
Transmembrane Helix	86	107	0.93
Non-Cytoplasmic	108	124	0.93
Transmembrane Helix	125	149	0.84
Cytoplasmic	150	167	0.90
Transmembrane Helix	168	188	0.90
Non-Cytoplasmic	189	208	0.92
Transmembrane Helix	209	233	0.92
Cytoplasmic	234	252	0.88
Transmembrane Helix	253	274	0.91
Non-Cytoplasmic	275	294	0.75
Transmembrane Helix	295	316	0.73
Cytoplasmic	317	395	0.91