YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HRH1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFANTSSTF EDKMCEGNRT AMASPQLLPL VVVLSSISLV TVGLNLLVLY AVHSERKLHT  60
   61 VGNLYIVSLS VADLIVGAVV MPMNILYLIM TKWSLGRPLC LFWLSMDYVA STASIFSVFI 120
  121 LCIDRYRSVQ QPLRYLRYRT KTRASATILG AWFFSFLWVI PILGWHHFMP PAPELREDKC 180
  181 ETDFYNVTWF KIMTAIINFY LPTLLMLWFY VKIYKAVRRH CQHRQLTNGS LPSFSELKLR 240
  241 SDDTKEGAKK PGRESPWGVL KRPSRDPSVG LDQKSTSEDP KMTSPTVFSQ EGERETRPCF 300
  301 RLDIMQKQSV AEGDVRGSKA NDQALSQPKM DEQSLNTCRR ISETSEDQTL VDQQSFSRTT 360
  361 DSDTSIEPGP GRVKSRSGSN SGLDYIKITW KRLRSHSRQY VSGLHLNRER KAAKQLGFIM 420
  421 AAFILCWIPY FIFFMVIAFC KSCCSEPMHM FTIWLGYINS TLNPLIYPLC NENFKKTFKK 480
  481 ILHIRS

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.93
Transmembrane Helix	30	52	0.91
Cytoplasmic	53	63	0.82
Transmembrane Helix	64	86	0.88
Non-Cytoplasmic	87	103	0.80
Transmembrane Helix	104	123	0.93
Cytoplasmic	124	143	0.91
Transmembrane Helix	144	165	0.92
Non-Cytoplasmic	166	191	0.93
Transmembrane Helix	192	211	0.94
Cytoplasmic	212	415	0.99
Transmembrane Helix	416	439	0.91
Non-Cytoplasmic	440	449	0.86
Transmembrane Helix	450	470	0.82
Cytoplasmic	471	486	0.85