YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157817712, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMDVTFLGT GAAYPSPTRG ASAVVLRCEG ECWLFDCGEG TQTQLMKSQL KAGRITKIFI  60
   61 THLHGDHFFG LPGLLCTISL QSGSVVSRQP IEIYGPVGLR DFIWRTMELS HTELVFPYVV 120
  121 HELVPTADQC PVEELRESAQ MDEADSSPKG QGRTILLDAE ENSYCLVDDE QFVVKAFRLF 180
  181 HRIPSFGFSV VEKKRTGKLS AQKLRDLGVP PGPAYGKLKN GISVVLDNGV TISPQDVLKK 240
  241 PMVGRKVCIL GDCSGVVGDG GVKLCFEADL LIHEATLDDS QMDKAKEHGH STPQMAATFA 300
  301 KLCRAKRLVL THFSQRYKPT ALAREGEADG ITELKKQAES VLELQEVTLA EDFMVIGIPI 360
  361 KK

Type	Start	End	Confidence
Signal Peptide	1	20	0.67
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	362	0.98