YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	5HT6R_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPEPGPVNS STPAWGPGPP PAPGGSGWVA AALCVVIVLT AAANSLLIVL ICTQPALRNT  60
   61 SNFFLVSLFT SDLMVGLVVM PPAMLNALYG RWVLARGLCL LWTAFDVMCC SASILNLCLI 120
  121 SLDRYLLILS PLRYKLRMTA PRALALILGA WSLAALASFL PLLLGWHELG KARTPAPGQC 180
  181 RLLASLPFVL VASGVTFFLP SGAICFTYCR ILLAARKQAV QVASLTTGTA GQALETLQVP 240
  241 RTPRPGMESA DSRRLATKHS RKALKASLTL GILLGMFFVT WLPFFVANIA QAVCDCISPG 300
  301 LFDVLTWLGY CNSTMNPIIY PLFMRDFKRA LGRFLPCVHC PPEHRPALPP PPCGPLTAVP 360
  361 DQASACSRCC LCLCRQTQIQ TPLQGAPRAC SSQPSFCCLE RPPGTPRHPP GPPLWSTSLS 420
  421 QTLWSLRYGR IHSVPP

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.94
Transmembrane Helix	28	51	0.93
Cytoplasmic	52	62	0.83
Transmembrane Helix	63	85	0.89
Non-Cytoplasmic	86	99	0.85
Transmembrane Helix	100	122	0.90
Cytoplasmic	123	142	0.87
Transmembrane Helix	143	164	0.92
Non-Cytoplasmic	165	185	0.90
Transmembrane Helix	186	209	0.89
Cytoplasmic	210	262	0.98
Transmembrane Helix	263	285	0.88
Non-Cytoplasmic	286	303	0.80
Transmembrane Helix	304	324	0.82
Cytoplasmic	325	436	0.92