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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|20302065, gi|...
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.82
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRLSGLAN NVLHELSGDY TGWTTMTSSE AELPQGSAME LNNSTQKDVL DRLADAEKLV  60
   61 LELKDIISKQ DAQLQQKDEA LQEEKKGAES KIKKIKLHAK AKITSLNKQI EELKTQGGAA 120
  121 SPPEVQAEEL SKHDKSSTEE EMEVEKIKHE LQEKEKLISN LQAQLDQAQS EQASQLDKSS 180
  181 AEMEDFILMR QKLQEKEELI GALQTQLSQT QAEQAAQKLR VMQRKLEEHE EALLGRAQVV 240
  241 DLLQKELTSA EQRNQDLSQQ LQLLEAEHST LRNTMEAERQ ESKILMEKVE LEMAERKEEL 300
  301 YQLQGQLERA GQAQAELEMQ YGTLQQRHET EMEEKTACIS LLQKNEQELQ SACDALKEEN 360
  361 SKLLQEQQEQ AAKSAQALQQ LEDELQQKSK EISQFVNKPN LEKHETSSQT SLPDVYNEGV 420
  421 QAVMEESVAS LQKRVLELEN EKGALLLSSL ELEELRAENE KLCSRITLLE AQNRAGEADG 480
  481 MVCEVSTAGI ALLNRSDSST EESGQDVLEN TFSQKHKELS VLLVEMKEAQ EEIAFLKSQL 540
  541 QGKRPEGDYE VLDRKEVQMM ESEGLPSVTA RDVLCAPRDK NSVPAVEGEQ AGMRDQHGTL 600
  601 EAGPLNDTGM ELNSPQPDGV DKSLSAPHVC LCHQGELERL KTQVLELETS LHTAKETHEK 660
  661 NLSEKAKEIS SLTQLTKEFK ESAEEARSTL TAVCEERDQL LYRVKELDVL GELRAQVREL 720
  721 ETSLAEAEKQ RGLDYESQRA QHNLLTEQIH SLSIEAKSKD VKIETLQREL DGVQLQFSEQ 780
  781 GTQIKSLQSQ LQTKESEVLE GAERMKDISK EMEELSQALS QKELEIAQMD QLLLEKKKDV 840
  841 ETLQQTIQEK DQQVTELSFS MTEKMVQLNE EKFSLGVEIK TLKEQLSLLS RAEGAKREQV 900
  901 EDSGAESSPK HGPHESSAEE PVCKEALQQE LEWLRKESEQ RKRKLQAALI SRKELLQKVS 960
  961 KLEEELAKVR EESTKDSLRE SEKRELEEDS KNKDDPEKYG TSEWRELEVS LRLTISEKEV1020
 1021 ELEGIRRDLK EKAAAEEELQ ALVQRMTQDL QNKTKQIDLL QEEITENQAT IQKFITGTMD1080
 1081 AGDGDSAVKE TSVSSPPRAG GGEHWKPELE GKIVDLEKEK TQLQKKLQEA LISRKAILKK1140
 1141 AQEKEKHLKE ELKEQKDAYR HLQEQFDGQS KENENIRAPL RQLQAKESTD QQLPGTGQQE1200
 1201 PTHGSEGLSL EGTEPASESD LHAAQPSHPG ETATLQATVS VAQIQDQLKE IEVEKEELEL1260
 1261 KISSTTSELT KKSEEVLLLQ EQINEQGLEI QNLKAASHEA KAHTEQLKQE LESSQLKIAD1320
 1321 LEHLKTLQPE LETLQKHVGQ KEEEVSYLVG QLGEKEQTLT TVQTEMEEQE RLIKALHTQL1380
 1381 EMQAKEHEER LKQVQVEICE LKKQPKELEE ESKAKQQLQR KLQAALISRK EALKENKSLQ1440
 1441 EQLSSARDAV EHLTKSLADV ESQVSVQNQE KDALLGKLAL LQEERDKLIV EMDKSLLENQ1500
 1501 SLGGSCESLK LALGGLTEDK EKLMKELESV RCSKIAESTE WQEKHKELQK EYEVLLQSYE1560
 1561 NVSNEAERIQ HVVESVRQEK QEVYAKLRSA ESDKREREKQ LQDAEQEMEE MKEKMRKFAK1620
 1621 SKQQKILELE EENDRLRAEA QPVGGANESM EALLSSNASL KEELERITLE YKTLSKEFEA1680
 1681 LMAEKNTLSE ETRNLKLQVE AQELKQASLE TTEKSDEPKD VIEEVTEAVV GKSQEQDSLS1740
 1741 ENAKLEDAEA TLLANSAKPG VSETFSSHDD INNYLQQLDQ LKGRIAELEM EKQKDRELSQ1800
 1801 TLENEKNALL TQISAKDSEL KLLEEEVAKI NMLNQQIQEE LSRVTKLKET AEEEKDDLEE1860
 1861 RLMNQLAELN GSIGNYYQDV TDAQIKNEQL ESEMQNLKRC VSELEEEKQQ LVKEKTKVES1920
 1921 EIRKEYMEKI QGAQKGPGSK IHAKELQELL KEKQQEVKQL QKDCIRYLGR ISALEKTVKA1980
 1981 LEFVHTESQK DLDATKGNLA QAVEHHKKAQ AELSSFKILL DDTQSEAARV LADNLKLKKE2040
 2041 LQSNKESIKS QIKQKDEDLL RRLEQAEEKH RKEKKNMQEK LDALHREKAH VEDTLAEIQV2100
 2101 SLTRKDKDMK ELQQSLDSTL AQLAAFTKSM SSLQDDRDRV IDEAKKWEQR FGDAIQTKEE2160
 2161 EVRLKEENCT ALKDQLRQMT IHMEELKITV SRLEHDKEIW ESKAQTELQH QQKAYDKLQE2220
 2221 ENKELMSQLE EAGQLYHDSK NELTKLESEL KSLKDQSTDL KNSLEKCREH ENNLEGIIKQ2280
 2281 QEADIQNCKF NCEQLETDLT ASRELTTRLH DEINVKEQKI ISLLSGKEEA IQVAIAELHQ2340
 2341 QHSKEIKELE NLLSQEEEEN LTLEEENKRA VEKTNQLTEA LETIKKESLE QKAQLDSFVK2400
 2401 SMSSLQDDRD RIVSDYRQLE ERHLSVILEK DELIQDAAAE NNKLKEEIRG LRGHMDDLNS2460
 2461 ENAKLDAELI QYRRDLNEVI TIKDSQQRQL LEAQLQQNKE LRNECVKLEG RLKGSEAEKQ2520
 2521 SLQMSLDALQ EENQGLSKEI KSFKEQLTAL HEEGALAVYH AQLRVREEEV QKLTAALSSS2580
 2581 QKRTVDLQEE LVCVQKEASK KVSEIEDKLK RELKHLHHNA GIMRNETETA EERVAELARD2640
 2641 LVEMEQKLLT VTKENKDLTA QIQAFGKSMS SLQDSRDHAT EELSDLKKKY DASLKELAQL2700
 2701 KGRQDLGRES DVLSQAAFPL TTSENISSRL EKLNQQLISK DEQLLHLSSE LESSHNQVQS2760
 2761 FTKAMTSLQN ERDHLWNELE KFRKSEEGKQ RSAAPSAASS PAEVQSLKKA MSSLQNDRDR2820
 2821 LLKELKNLQQ QYLQMNQEIT ELRPLKAQLQ ESQDQTKALQ MMKEELRQEN LSWQHELDQL2880
 2881 RVEKNSWELH ERRMKEQYLM AISDKDQQLG HLQNLLRELR SSSQTQILPT QYQRQASSGT2940
 2941 SAALDGSQNL VYETDCLRTQ LNDSLKEIHQ KELRIQQLNS KFSQLLEEKN ILSTQLRDAN3000
 3001 QSLRDSQHHY SNLFNHCAIL ERQVQQLQAT GPLNADVAPG APQEKDGIHI KTETETTGEE3060
 3061 QPSFSEVQQQ LCNTKHDLSE LKKLLEEERD QRLTAENALS LAKEQIRRLE HSEWESARTP3120
 3121 IIGACGSQEQ VLLMDLPGSS CRRTRSSAGW KRVLRSLCRS RTRVPLLAAI YFLMIHVLLV3180
 3181 LCFTGHL

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