YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CNGA4_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQDGKVKTT ESTPPAPTKA RKWLPVLDPS GDYYYWWLNT MVFPIMYNLI IVVCRACFPD  60
   61 LQHSYLVAWF VLDYTSDLLY LLDIGVRFHT GFLEQGILVV DKGMIASRYV RTWSFLLDLA 120
  121 SLVPTDAAYV QLGPHIPTLR LNRFLRVPRL FEAFDRTETR TAYPNAFRIA KLMLYIFVVI 180
  181 HWNSCLYFAL SRYLGFGRDA WVYPDPAQPG FERLRRQYLY SFYFSTLILT TVGDTPLPDR 240
  241 EEEYLFMVGD FLLAVMGFAT IMGSMSSVIY NMNTADAAFY PDHALVKKYM KLQHVNKRLE 300
  301 RRVIDWYQHL QINKKMTNEV AILQHLPERL RAEVAVSVHL STLSRVQIFQ NCEASLLEEL 360
  361 VLKLQPQTYS PGEYVCRKGD IGREMYIIRE GQLAVVADDG VTQYAVLGAG LYFGEISIIN 420
  421 IKGNMSGNRR TANIKSLGYS DLFCLSKEDL REVLSEYPQA QAVMEEKGRE ILLKMNKLDV 480
  481 NAEAAEIALQ EATESRLKGL DQQLDDLQTK FARLLAELES SALKIAYRIE RLEWQTREWP 540
  541 MPEDMGEADD EAEPGEGTSK DGEGKAGQAG PSGIE

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.73
Transmembrane Helix	33	54	0.74
Cytoplasmic	55	171	0.68
Transmembrane Helix	172	194	0.81
Non-Cytoplasmic	195	217	0.62
Transmembrane Helix	218	237	0.66
Cytoplasmic	238	243	0.46
Transmembrane Helix	244	270	0.74
Non-Cytoplasmic	271	575	0.50