YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GALR3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADIQNISLD SPGSVGAVAV PVIFALIFLL GMVGNGLVLA VLLQPGPSAW QEPRSTTDLF  60
   61 ILNLAVADLC FILCCVPFQA AIYTLDAWLF GAFVCKTVHL LIYLTMYASS FTLAAVSLDR 120
  121 YLAVRHPLRS RALRTPRNAR AAVGLVWLLA ALFSAPYLSY YGTVRYGALE LCVPAWEDAR 180
  181 RRALDVATFA AGYLLPVAVV SLAYGRTLCF LWAAVGPAGA AAAEARRRAT GRAGRAMLAV 240
  241 AALYALCWGP HHALILCFWY GRFAFSPATY ACRLASHCLA YANSCLNPLV YSLASRHFRA 300
  301 RFRRLWPCGR RRHRHHHRAH RALRRVQPAS SGPAGYPGDA RPRGWSMEPR GDALRGGGET 360
  361 RLTLSPRGPQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.94
Transmembrane Helix	18	43	0.88
Cytoplasmic	44	58	0.96
Transmembrane Helix	59	82	0.93
Non-Cytoplasmic	83	99	0.87
Transmembrane Helix	100	122	0.89
Cytoplasmic	123	138	0.94
Transmembrane Helix	139	160	0.89
Non-Cytoplasmic	161	193	0.93
Transmembrane Helix	194	216	0.78
Cytoplasmic	217	235	0.75
Transmembrane Helix	236	255	0.92
Non-Cytoplasmic	256	272	0.82
Transmembrane Helix	273	294	0.84
Cytoplasmic	295	370	0.92