YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACM3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLHSNSTTS PLFPNISSSW VHSPSEAGLP LGTVTQLGSY NISQETGNFS SNDTSSDPLG  60
   61 GHTIWQVVFI AFLTGFLALV TIIGNILVIV AFKVNKQLKT VNNYFLLSLA CADLIIGVIS 120
  121 MNLFTTYIIM NRWALGNLAC DLWLSIDYVA SNASVMNLLV ISFDRYFSIT RPLTYRAKRT 180
  181 TKRAGVMIGL AWVISFVLWA PAILFWQYFV GKRTVPPGEC FIQFLSEPTI TFGTAIAAFY 240
  241 MPVTIMTILY WRIYKETEKR TKELAGLQAS GTEAEAENFV HPTGSSRSCS SYELQQQGVK 300
  301 RSSRRKYGRC HFWFTTKSWK PSAEQMDQDH SSSDSWNNND AAASLENSAS SDEEDIGSET 360
  361 RAIYSIVLKL PGHSSILNST KLPSSDNLQV SNEDLGTVDV ERNAHKLQAQ KSMGDGDNCQ 420
  421 KDFTKLPIQL ESAVDTGKTS DTNSSADKTT ATLPLSFKEA TLAKRFALKT RSQITKRKRM 480
  481 SLIKEKKAAQ TLSAILLAFI ITWTPYNIMV LVNTFCDSCI PKTYWNLGYW LCYINSTVNP 540
  541 VCYALCNKTF RTTFKTLLLC QCDKRKRRKQ QYQQRQSVIF HKRVPEQAL

Type	Start	End	Confidence
Non-Cytoplasmic	1	67	0.78
Transmembrane Helix	68	92	0.90
Cytoplasmic	93	103	0.87
Transmembrane Helix	104	128	0.88
Non-Cytoplasmic	129	143	0.89
Transmembrane Helix	144	167	0.82
Cytoplasmic	168	183	0.94
Transmembrane Helix	184	206	0.89
Non-Cytoplasmic	207	229	0.91
Transmembrane Helix	230	251	0.93
Cytoplasmic	252	487	0.99
Transmembrane Helix	488	506	0.92
Non-Cytoplasmic	507	526	0.84
Transmembrane Helix	527	547	0.56
Cytoplasmic	548	589	0.63