YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACM1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTSVPPAVS PNITVLAPGK GPWQVAFIGI TTGLLSLATV TGNLLVLISF KVNTELKTVN  60
   61 NYFLLSLACA DLIIGTFSMN LYTTYLLMGH WALGTLACDL WLALDYVASN ASVMNLLLIS 120
  121 FDRYFSVTRP LSYRAKRTPR RAALMIGLAW LVSFVLWAPA ILFWQYLVGE RTVLAGQCYI 180
  181 QFLSQPIITF GTAMAAFYLP VTVMCTLYWR IYRETENRAR ELAALQGSET PGKGGGSSSS 240
  241 SERSQPGAEG SPESPPGRCC RCCRAPRLLQ AYSWKEEEEE DEGSMESLTS SEGEEPGSEV 300
  301 VIKMPMVDSE AQAPTKQPPK SSPNTVKRPT KKGRDRGGKG QKPRGKEQLA KRKTFSLVKE 360
  361 KKAARTLSAI LLAFILTWTP YNIMVLVSTF CKDCVPETLW ELGYWLCYVN STVNPMCYAL 420
  421 CNKAFRDTFR LLLLCRWDKR RWRKIPKRPG SVHRTPSRQC

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.95
Transmembrane Helix	25	48	0.90
Cytoplasmic	49	61	0.81
Transmembrane Helix	62	82	0.92
Non-Cytoplasmic	83	101	0.77
Transmembrane Helix	102	121	0.86
Cytoplasmic	122	141	0.88
Transmembrane Helix	142	164	0.90
Non-Cytoplasmic	165	186	0.91
Transmembrane Helix	187	211	0.87
Cytoplasmic	212	362	0.99
Transmembrane Helix	363	384	0.76
Non-Cytoplasmic	385	403	0.77
Transmembrane Helix	404	422	0.47
Cytoplasmic	423	460	0.57