YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SYPH_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVVNQLVAG GQFRVVKEPL GFVKVLQWVF AIFAFATCGS YTGELRLSVE CANKTESALN  60
   61 IEVEFEYPFR LHQVYFDAPS CVKGGTTKIF LVGDYSSSAE FFVTVAVFAF LYSMGALATY 120
  121 IFLQNKYREN NKGPMMDFLA TAVFAFMWLV SSSAWAKGLS DVKMATDPEN IIKEMPMCRQ 180
  181 TGNTCKELRD PVTSGLNTSV VFGFLNLVLW VGNLWFVFKE TGWAAPFMRA PPGAPEKQPA 240
  241 PGDAYGDAGY GQGPGGYGPQ DSYGPQGGYQ PDYGQPASGG GGYGPQGDYG QQGYGQQGAP 300
  301 TSFSNQM

Type	Start	End	Confidence
Cytoplasmic	1	19	0.94
Transmembrane Helix	20	39	0.86
Non-Cytoplasmic	40	100	0.94
Transmembrane Helix	101	123	0.93
Cytoplasmic	124	134	0.90
Transmembrane Helix	135	156	0.89
Non-Cytoplasmic	157	199	0.93
Transmembrane Helix	200	218	0.94
Cytoplasmic	219	307	0.97