YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109463936, gi...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHLGPHHLH PGHAEPISFG IDQILNSPDQ GGCMGPASRL QDGEYGLGCL VGGAYTYGGG  60
   61 GSAAGAGAGG TGAYGTGGPG GPGGPAGGGG GACSMGPLAG SYNVNMALAG GPGPGGGGGG 120
  121 AGAGGAGALS AAGVIRVPAH RPLAGAVAHP QPLATGLPTV PSVPAVPGVN NLTGLTFPWM 180
  181 ESNRRYTKDR FTGHPYQNRT PPKKKKPRTS FTRLQICELE KRFHRQKYLA SAERAALAKA 240
  241 LKMTDAQVKT WFQNRRTKWR RQTAEEREAE RQQANRILLQ LQQEAFQKSL AQPLPADPLC 300
  301 VHNSSLFALQ NLQPWSDDST KITSVTSVAS ACE

Type	Start	End	Confidence
Cytoplasmic	1	46	0.87
Transmembrane Helix	47	69	0.74
Non-Cytoplasmic	70	114	0.54
Transmembrane Helix	115	137	0.81
Cytoplasmic	138	333	0.69