YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	K1C25_RAT
Protein type:	Transmembrane
Type Confidence:	0.50
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLRLSSGSK RSYARPSTGS LRGASFGAAN ACGVAGIGSG FSCAFGSSST GGNTGVANSC  60
   61 AGFTVNEGGL LSGNEKVTMQ NLNDRLASYL DNVQALQEAN ADLEQKIKGW YEKFGPGSCR 120
  121 GLDHDYSRYF PIIDDLKNQI ITSTTSNANA VLQIDNARLT ADDFRLKYEN ELALHQSVEA 180
  181 DVNGLRRVLD EITLCRTDLE IQYETLSEEL TYLKKNHKEE MQALQCAAGG NVNVEMNAAP 240
  241 GVDLTVLLNN MRAEYEALAE QNRRDAEAWF QEKSASLQQQ ITEDVGATTS ARNELTEMKR 300
  301 TLQTLEIELQ SLLATKHSLE CSLTETEGNY CTQLAQIQAQ ISALEEQLHQ VRTETEGQKL 360
  361 EYEQLLNVKA HLEKEIETYC LLIGGDEGAC KSSSYKSKDY TSGNAGNQSK DSPKAIVVKK 420
  421 VLEEVDQRSK ILTTRLHSLE EKSQSN

Type	Start	End	Confidence
Cytoplasmic	1	20	0.48
Transmembrane Helix	21	41	0.48
Non-Cytoplasmic	42	446	0.99