YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CXA4_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDWGFLEKL LDQVQEHSTV VGKIWLTVLF IFRILILGLA GESVWGDEQS DFECNTAQPG  60
   61 CTNVCYDQAF PISHIRYWVL QFLFVSTPTL IYLGHVIYLS RREERLRQKE GELRALPSKD 120
  121 PHVERALAAI EHQMAKISVA EDGRLRIRGA LMGTYVISVL CKSVLEAGFL YGQWRLYGWT 180
  181 MEPVFVCQRA PCPHVVDCYV SRPTEKTIFI IFMLVVGVIS LVLNLLELVH LLCRCVSREI 240
  241 KARRDHDTRP AQGSASDPYP EQVFFYLPMG EGPSSPPCPT YNGLSSTEQN WANLTTEERL 300
  301 TSTRPPPFVN AAPQGGQKSS SRPNSSASKK QYV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	40	0.93
Non-Cytoplasmic	41	77	0.95
Transmembrane Helix	78	99	0.95
Cytoplasmic	100	150	0.98
Transmembrane Helix	151	171	0.89
Non-Cytoplasmic	172	208	0.91
Transmembrane Helix	209	233	0.89
Cytoplasmic	234	333	0.96