YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|195540255, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTMDKQNLL ESTRGARSFF GALWKSEASR IPPVNLPSVE LAVQSNHYCH AQKDSGSHPN  60
   61 SEKQRARRKL YVASAICLVF MIGEIIGGYL AQSLAIMTDA AHLLTDFASM LISLFSLWVS 120
  121 SRPATKTMNF GWQRAEILGA LLSVLSIWVV TGVLVYLAVQ RLISGDYEIK GDTMLITSGC 180
  181 AVAVNIIMGL ALHQSGHGHS HGHSHEDSSQ QQQNPSVRAA FIHVVGDLLQ SVGVLVAAYI 240
  241 IYFKPEYKYV DPICTFLFSI LVLGTTLTIL RDVILVLMEG TPKGVDFTTV KNLLLSVDGV 300
  301 EALHSLHIWA LTVAQPVLSV HIAIAQNVDA QAVLKVARDR LQGKFNFHTM TIQIESYSED 360
  361 MKSCQECQGP SE

Type	Start	End	Confidence
Cytoplasmic	1	69	0.99
Transmembrane Helix	70	91	0.94
Non-Cytoplasmic	92	99	0.79
Transmembrane Helix	100	120	0.85
Cytoplasmic	121	136	0.84
Transmembrane Helix	137	159	0.91
Non-Cytoplasmic	160	172	0.82
Transmembrane Helix	173	193	0.88
Cytoplasmic	194	218	0.80
Transmembrane Helix	219	242	0.87
Non-Cytoplasmic	243	248	0.74
Transmembrane Helix	249	270	0.85
Cytoplasmic	271	372	0.79