YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|147905995, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGAVGRASL KVLSASKPSI ELTKAVPAAL SSRSVHAGQV DSAAAAAKAQ AAANTSNGQI  60
   61 TAVIGAVVDV QFEDQLPPIL NALEVQGRSP RLILEVAQHL GENTVRTIAM DGTEGLVRGQ 120
  121 NVLDTGAPIK IPVGPETLGR IMNVIGEPID ERGPIVTDKF AAIHADAPEF VEMSVQQEIL 180
  181 VTGIKVVDLL APYAKGGKIG LFGGAGVGKT VLIMELINNV AKAHGGYSVF AGVGERTREG 240
  241 NDLYHEMIES GVISLKDKTS KVALVYGQMN EPPGARARVA LTGLTVAEYF RDQEGQDVLL 300
  301 FIDNIFRFTQ AGSEVSALLG RIPSAVGYQP TLATDMGTMQ ERITTTKKGS ITSVQAIYVP 360
  361 ADDLTDPAPA TTFAHLDATT VLSRAIAELG IYPAVDPLDS TSRILDPNII GEEHYNIARG 420
  421 VQKILQDYKS LQDIIAILGM DELSEEDKLI VSRARKIQRF LSQPFQVAEV FTGHAGKLVP 480
  481 IKDTIKGFKM ILNGELDHLP EVAFYMVGPI EEVVAKAEKI AESQ

Type	Start	End	Confidence
Signal Peptide	1	37	0.60
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	524	0.99