YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PAR2_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.95
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	79	0.96
Transmembrane Helix	80	102	0.92
Cytoplasmic	103	109	0.95
Transmembrane Helix	110	130	0.93
Non-Cytoplasmic	131	150	0.86
Transmembrane Helix	151	171	0.89
Cytoplasmic	172	189	0.81
Transmembrane Helix	190	211	0.94
Non-Cytoplasmic	212	242	0.95
Transmembrane Helix	243	266	0.91
Cytoplasmic	267	285	0.96
Transmembrane Helix	286	311	0.87
Non-Cytoplasmic	312	322	0.86
Transmembrane Helix	323	346	0.83
Cytoplasmic	347	397	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSLSLAWLL GGITLLAASA SCNRTVNAPG PNSKGRSLIG RLDTPPPITG KGAPVEPGFS  60
   61 VDEFSASVLT GKLTTVFLPV IYIIVFVIGL PSNGMALWVF FFRTKKKHPA VIYMANLALA 120
  121 DLLSVIWFPL KISYHLHGND WTYGDALCKV LIGFFYGNMY CSILFMTCLS VQRYWVIVNP 180
  181 MGHSRKRANI AVGVSLAIWL LIFLVTIPLY VMRQTIYIPA LNITTCHDVL PEEVLVGDMF 240
  241 SYFLSLAIGV FLFPALLTAS AYVLMIKTLR SSAMDEHSEK KRRRAIRLII TVLSMYFICF 300
  301 APSNVLLVVH YFLIKSQRQS HVYALYLVAL CLSTLNSCID PFVYYFVSKD FRDQARNALL 360
  361 CRSVRTVKRM QISLTSNKFS RKSSSYSSSS TSVKTSY