YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FGRL1_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRSPALLLL LLGALPSAEA ARGPPRMADK VVPRQVARLG RTVRLQCPVE GDPPPLTMWT  60
   61 KDGRTIHSGW SRFRVLPQGL KVKEVEAEDA GVYVCKATNG FGSLSVNYTL IIMDDISPGK 120
  121 ENPGPGGSSG GQEDPVSQQW ARPRFTQPSK MRRRVIARPV GSSVRLKCVA SGHPRPDIMW 180
  181 MKDDQTLTRL EASEHRKKKW TLSLKNLKPE DSGKYTCRVS NRAGAINATY KVDVIQRTRS 240
  241 KPVLTGTHPV NTTVDFGGTT SFQCKVRSDV KPVIQWLKRV EYGSEGRHNS TIDVGGQKFV 300
  301 VLPTGDVWSR PDGSYLNKLL ISRARQDDAG MYICLGANTM GYSFRSAFLT VLPDPKPPGP 360
  361 PVAHSSSTTS LPWPVVIGIP AGAVFILGTV LLWLCQTKKK PCAPASTLPV PGHRPPGTSR 420
  421 ERSGDKDLPS LAVGICEEHG STMAPQHILA PGSTAGPKLY PKLYTDVHTH THTHTCTHTL 480
  481 SCGGQGSSAP ACPLSVLNTA NLQALCPEVG VWGPRQQVGR IENNGGRVS

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	372	0.99
Transmembrane Helix	373	395	0.90
Cytoplasmic	396	529	0.96