YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PDPN_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWTAPVLLWV LGSVWFWDSA QGGAIGALED DLVTPGPGDD MVNPGLEDRI ETTDTTGELD  60
   61 KSTAKAPLVP TQPPIEELPT SGTSDHDHKE HESTTTVKAV TSHSTDKKTT HPNRDNAGGE 120
  121 TQTTDKKDGL AVVTLVGIII GVLLAIGFIG GIIIVVMRKI SGRFSP

Type	Start	End	Confidence
Signal Peptide	1	22	0.93
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	130	0.96
Transmembrane Helix	131	156	0.90
Cytoplasmic	157	166	0.91