YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STX6_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMEDPFFVV KGEVQKAVNT AQGLFQRWTE LLQGPSAATR EEIDWTTNEL RNNLRSIEWD  60
   61 LEDLDETISI VEANPRKFNL DATELSIRKA FITSTRQIVR DMKDQMSASS VQALAERKNR 120
  121 QALLGDSSSQ NWDAGVTDRY GRLDRELQLA NSHFIEEQQA QQQLIVEQQD EQLELVSGSI 180
  181 GVLKNMSQRI GGELEEQAVM LDDFSHELES TQSRLDNVMK KLAKVSHMTS DRRQWCAIAI 240
  241 LFAVLLVVLT LFLVL

Type	Start	End	Confidence
Cytoplasmic	1	233	0.85
Transmembrane Helix	234	254	0.94
Non-Cytoplasmic	255	255	0.86