YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COLI_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRFCNSRSG ALLLALLLQT SIDVWSWCLE SSQCQDLTTE SNLLACIRAC RLDLSAETPV  60
   61 FPGNGDEQPL TENPRKYVMG HFRWDRFGPR NSSSAGGSAQ RRAEEETAGG DGRPEPSPRE 120
  121 GKRSYSMEHF RWGKPVGKKR RPVKVYPNVA ENESAEAFPL EFKRELEGEQ PDGLEQVLEP 180
  181 DTEKADGPYR VEHFRWGNPP KDKRYGGFMT SEKSQTPLVT LFKNAIIKNV HKKGQ

Type	Start	End	Confidence
Signal Peptide	1	26	0.99
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	235	0.99