YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AMBP_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGLGALFLL LTACLTLKAD NVPTLPDIQV QENFNEARIY GKWFNLAVGS TCPWLRRIKN  60
   61 KMSVSTLVLQ EGATEAEISV TSTQWRKGVC EEISGVYQKT DIDGKFLYHK SKWNATLESY 120
  121 VVHTNYDEYA IFLTKKFSHR HGPTITAKLY GREPQLRDSL LQEFREVALS VGIPENSIVF 180
  181 MADRGECVPG DREVESTSFA RARRAVLPQE NEGSGSEPLI TGTLKKEDSC QLNYSEGPCL 240
  241 GMQQKYYYNG ASMACETFQY GGCLGNGNNF ASEKECLQTC RTIAACNLPI VQGPCRAFAE 300
  301 LWAFDAAQGK CIQFIYGGCK GNGNKFYSEK ECKEYCGVPG DGYEELTRS

Type	Start	End	Confidence
Signal Peptide	1	19	0.98
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	349	0.99