YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PANX1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIAHLATEY VFSDFLLKEP TEPKFKGLRL ELAVDKMVTC IAVGLPLLLI SLAFAQEISI  60
   61 GTQISCFSPS SFSWRQAAFV DSYCWAAVQQ KNSLQSESGN LPLWLHKFFP YILLLFAILL 120
  121 YLPALFWRFA AAPHLCSDLK FIMEELDKVY NRAIKAAKSA RDLDLRDGPG PPGVTENVGQ 180
  181 SLWEISESHF KYPIVEQYLK TKKNSSHLIM KYISCRLVTF AVVLLACIYL SYYFSLSSLS 240
  241 DEFLCSIKSG VLRNDSTIPD SFQCKLIAVG IFQLLSLINL LVYALLVPVV IYTLFVPFRQ 300
  301 KTDVLKVYEI LPTFDVLHFK SEGYNDLSLY NLFLEENISE LKSYKCLKVL ENIKSNGQGI 360
  361 DPMLLLTNLG MIKMDVIDGK VPMSLQTKGE DQGSQRMDFK DLDLSSETAA NNGEKNSRQR 420
  421 LLNSSC

Type	Start	End	Confidence
Cytoplasmic	1	33	0.97
Transmembrane Helix	34	55	0.88
Non-Cytoplasmic	56	107	0.94
Transmembrane Helix	108	130	0.88
Cytoplasmic	131	211	0.99
Transmembrane Helix	212	233	0.93
Non-Cytoplasmic	234	274	0.91
Transmembrane Helix	275	296	0.87
Cytoplasmic	297	426	0.96