YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SC6A9_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.82
Transmembrane Helix	39	58	0.75
Non-Cytoplasmic	59	69	0.66
Transmembrane Helix	70	93	0.83
Cytoplasmic	94	113	0.70
Transmembrane Helix	114	140	0.84
Non-Cytoplasmic	141	217	0.95
Transmembrane Helix	218	238	0.91
Cytoplasmic	239	246	0.81
Transmembrane Helix	247	269	0.85
Non-Cytoplasmic	270	299	0.84
Transmembrane Helix	300	318	0.94
Cytoplasmic	319	328	0.85
Transmembrane Helix	329	352	0.85
Non-Cytoplasmic	353	387	0.86
Transmembrane Helix	388	409	0.85
Cytoplasmic	410	429	0.88
Transmembrane Helix	430	454	0.87
Non-Cytoplasmic	455	462	0.84
Transmembrane Helix	463	485	0.94
Cytoplasmic	486	505	0.92
Transmembrane Helix	506	525	0.96
Non-Cytoplasmic	526	539	0.83
Transmembrane Helix	540	562	0.91
Cytoplasmic	563	638	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVAHGPVAT SSPEQNGAVP SEATKKDQNL TRGNWGNQIE FVLTSVGYAV GLGNVWRFPY  60
   61 LCYRNGGGAF MFPYFIMLVF CGIPLFFMEL SFGQFASQGC LGVWRISPMF KGVGYGMMVV 120
  121 STYIGIYYNV VICIAFYYFF SSMTHVLPWA YCNNPWNTPD CAGVLDASNL TNGSRPTALS 180
  181 GNLSHLFNYT LQRTSPSEEY WRLYVLKLSD DIGDFGEVRL PLLGCLGVSW VVVFLCLIRG 240
  241 VKSSGKVVYF TATFPYVVLT ILFVRGVTLE GAFTGIMYYL TPKWDKILEA KVWGDAASQI 300
  301 FYSLGCAWGG LITMASYNKF HNNCYRDSVI ISITNCATSV YAGFVIFSIL GFMANHLGVD 360
  361 VSRVADHGPG LAFVAYPEAL TLLPISPLWS LLFFFMLILL GLGTQFCLLE TLVTAIVDEV 420
  421 GNEWILQKKT YVTLGVAVAG FLLGIPLTSQ AGIYWLLLMD NYAASFSLVV ISCIMCVSIM 480
  481 YIYGHRNYFQ DIQMMLGFPP PLFFQICWRF VSPTIIFFIL IFTVIQYRPI TYNHYQYPGW 540
  541 AVAIGFLMAL SSVICIPLYA LFQLCRTDGD TLLQRLKNAT KPSRDWGPAL LEHRTGRYAP 600
  601 TTTPSPEDGF EVQPLHPDKA QIPIVGSNGS SRLQDSRI