YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S5A1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPLMELDEL CLLDMLVYLE GFMAFVSIVG LRSVGSPYGR YSPQWPGIRV PARPAWFIQE  60
   61 LPSMAWPLYE YIRPAAARLG NLPNRVLLAM FLIHYVQRTL VFPVLIRGGK PTLLVTFVLA 120
  121 FLFCTFNGYV QSRYLSQFAV YAEDWVTHPC FLTGFALWLV GMVINIHSDH ILRNLRKPGE 180
  181 TGYKIPRGGL FEYVSAANYF GELVEWCGFA LASWSLQGVV FALFTLSTLL TRAKQHHQWY 240
  241 HEKFEDYPKS RKILIPFVL

Type	Start	End	Confidence
Cytoplasmic	1	11	0.68
Transmembrane Helix	12	35	0.75
Non-Cytoplasmic	36	80	0.51
Transmembrane Helix	81	96	0.63
Cytoplasmic	97	110	0.44
Transmembrane Helix	111	130	0.91
Non-Cytoplasmic	131	144	0.54
Transmembrane Helix	145	167	0.87
Cytoplasmic	168	184	0.53
Transmembrane Helix	185	201	0.30
Non-Cytoplasmic	202	208	0.55
Transmembrane Helix	209	230	0.81
Cytoplasmic	231	259	0.79