YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S5A2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIVCHQVPV LAGSATLATM GTLILCLGKP ASYGKHTESV SSGVPFLPAR IAWFLQELPS  60
   61 FVVSVGMLAW QPRSLFGPPG NVLLALFSAH YFHRTFIYSL LTRGRPFPAV LFLRATAFCI 120
  121 GNGLLQAYYL VYCAEYPEEW YTDVRFSFGV FLFILGMGIN IHSDYTLRQL RKPGEVIYRI 180
  181 PRGGLFTYVS GANFLGEIIE WIGYALATWS VPAFAFAFFT LCFLGMQAFY HHRFYLKMFK 240
  241 DYPKSRKALI PFIF

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.64
Transmembrane Helix	8	28	0.82
Cytoplasmic	29	48	0.62
Transmembrane Helix	49	70	0.67
Non-Cytoplasmic	71	74	0.75
Transmembrane Helix	75	97	0.77
Cytoplasmic	98	109	0.86
Transmembrane Helix	110	130	0.94
Non-Cytoplasmic	131	143	0.86
Transmembrane Helix	144	163	0.92
Cytoplasmic	164	183	0.83
Transmembrane Helix	184	204	0.89
Non-Cytoplasmic	205	210	0.70
Transmembrane Helix	211	230	0.92
Cytoplasmic	231	254	0.91