YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5640121, gi\|5...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSHSLRYFYT ALSRPGLGEP RFIVVGYVDD TQFVRYDSDV ENPRMEPRAR WMEQEEPAYW  60
   61 ERETRKARDT GRNFKVNLRT LLRYYNQSDD ESHTLQWMYG CDVGPDGHLL RGYCQEAYDG 120
  121 RDYISLNEDL RSWTATDMAS QASKIKSEEV GEAHHQRAYL QGPCVEWLHT YLHLGKETLL 180
  181 RSDPPKAHVT LHPRPEGDVT LRCWALGFYP ADITLTWQLN GEDLTQDMEL VETRPAGDGT 240
  241 FQKWAAVVVP SGEELKYTCH VEHEGLPEPL ALRWEPSPFT DSSMPVIVVL GAVAIIGAVA 300
  301 IIGAVAIIGA VVRRRKRNTG EKGSYAHVLG SKAFQISDWP QKA

Type	Start	End	Confidence
Non-Cytoplasmic	1	285	0.97
Transmembrane Helix	286	310	0.93
Cytoplasmic	311	343	0.96