YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60223063, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.84
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRGLAAPLL LLILHGGWSC LDLTCYTDYL WTITCVLETW SPNPSILSLT WQDEYEELQD  60
   61 KETSCSLHAS GHNTTHMWYT CHMRLSQFMS DDVFTVNMMD QSSNSSQECG SFVLAESIKP 120
  121 APPLNVTVTF SGRYDISWDS IYEEPSNYVL RGKLQYELQY RNLRDPYAVR PVTKLISVDS 180
  181 RNISLLPQEF QKDSSYQLQV RAAPQPGTSF RGTWSEWSDP IIFQTQAEEP EAGWDPHVLL 240
  241 LLAVLILVLV FMGLKNHLPW RLCKKIWAPV PTPESFFQPL YREHSGNFKK WVNTPFTASS 300
  301 VELGPQSPTT SVLHLSLYPA KGKKFLGPLG LEEQLECDGM SGPGHKCQGV SAYSEERDRP 360
  361 YGLVSIDTVT VGDAEGLGAW PFSCEDDGYP ALNLDAVRES GPNGEDLLLV TDPAFLSCGC 420
  421 VSGSGLRLGG SPGSLLDRLR LSFAKEGDWT AGPPWRTGSL EGGSESEAGS PPGLDMDTFD 480
  481 SGFAGSDCGS PVETDEGPPR SYLRQWVVRT PPPVDSGAQN S

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	232	0.99
Transmembrane Helix	233	254	0.77
Cytoplasmic	255	521	0.81