YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S35A3_RAT
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSANLKYLSL GILVFQTTSL VLTMRYSRTL KEEGPRYLSS TAVVVAEFLK IMACIFLVYK  60
   61 DSKCSVRTLN RVLHDEILNK PMETLKLAIP SGIYTLQNNL LYVALSNLDA ATYQVTYQLK 120
  121 ILTTALFSVS MLGKKLGMYQ WLSLVILMAG VAFVQWPSDS QELNSKDLST GSQFVGLMAV 180
  181 LIACFSSGFA GVYFEKILKE TKQSVWIRNI QLGFFGSIFG LMGVYVYDGE LVSKNGFFQG 240
  241 YNQLTWIVVV LQALGGLVIA AVIKYADNIL KGFATSLSII LSTIISYFWL QDFVPTSVFF 300
  301 LGAILVIAAT FLYGYDPKPA GNPTKA

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.36
Transmembrane Helix	7	26	0.68
Cytoplasmic	27	136	0.83
Transmembrane Helix	137	156	0.94
Non-Cytoplasmic	157	173	0.89
Transmembrane Helix	174	194	0.95
Cytoplasmic	195	204	0.93
Transmembrane Helix	205	227	0.90
Non-Cytoplasmic	228	243	0.90
Transmembrane Helix	244	263	0.95
Cytoplasmic	264	271	0.73
Transmembrane Helix	272	290	0.95
Non-Cytoplasmic	291	296	0.79
Transmembrane Helix	297	315	0.96
Cytoplasmic	316	326	0.93