YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MSMO1_RAT
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMNKSVGLF SSASLAVDYV DSLLPENPLQ EPFKNAWVYM LDNYTKFQIA TWGSLIVHET  60
   61 IYFLFSLPGF LFQFIPFMRK YKIQKDKPET FEGQWKCLKG ILFNHFFIQL PLICGTYYFT 120
  121 EFFNIPYDWE RMPRWYFTLA RCLGCAVIED TWHYFLHRLL HHKRIYKYIH KVHHEFQAPF 180
  181 GIEAEYAHPL ETLILGTGFF IGIVLLCDHV ILLWAWVTMR LLETIDVHSG YDIPLNPLNY 240
  241 IPFYTGARHH DFHHMNFIGN YASTFTWWDR IFGTDVQYHA YTEKMKKLGK KSE

Type	Start	End	Confidence
Non-Cytoplasmic	1	54	0.75
Transmembrane Helix	55	77	0.80
Cytoplasmic	78	100	0.81
Transmembrane Helix	101	120	0.86
Non-Cytoplasmic	121	192	0.60
Transmembrane Helix	193	217	0.84
Cytoplasmic	218	293	0.63