YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13592001, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLPLGVKV EDSAFAKPAG GGAAQAPGAA AATATAMGTD EEGAKPKVPA SLLPFSVEAL  60
   61 MADHRKPGAK ESVLVASEGA QAAGGSVQHL GTRPGSLGAP DAPSSPGPLG HFSVGGLLKL 120
  121 PEDALVKAES PEKLDRTPWM QSPRFSPPPA RRLSPPACTL RKHKTNRKPR TPFTTAQLLA 180
  181 LERKFRQKQY LSIAERAEFS SSLSLTETQV KIWFQNRRAK AKRLQEAELE KLKMAAKPML 240
  241 PPAAFGLSFP LGGPAAVAAA AGASLYSASG PFQRAALPVA PVGLYTAHVG YSMYHLT

Type	Start	End	Confidence
Cytoplasmic	1	242	0.85
Transmembrane Helix	243	263	0.87
Non-Cytoplasmic	264	274	0.70
Transmembrane Helix	275	294	0.65
Cytoplasmic	295	297	0.56