YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DHCR7_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.66
Transmembrane Helix	33	55	0.92
Non-Cytoplasmic	56	91	0.51
Transmembrane Helix	92	110	0.65
Cytoplasmic	111	146	0.47
Transmembrane Helix	147	167	0.83
Non-Cytoplasmic	168	173	0.48
Transmembrane Helix	174	198	0.78
Cytoplasmic	199	233	0.63
Transmembrane Helix	234	253	0.66
Non-Cytoplasmic	254	259	0.47
Transmembrane Helix	260	282	0.76
Cytoplasmic	283	297	0.50
Transmembrane Helix	298	316	0.66
Non-Cytoplasmic	317	327	0.61
Transmembrane Helix	328	348	0.89
Cytoplasmic	349	409	0.69
Transmembrane Helix	410	432	0.73
Non-Cytoplasmic	433	471	0.44

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKSQHNAS KAKNHNVKAE SQGQWGRAWE VDWFSLVSVI FLLLFAPFIV YYFIMACDQY  60
   61 SCSLTAPILD VATGRASLAD IWAKTPPVTA KAAQLYALWV SFQVLLYSWL PDFCHRFLPG 120
  121 YVGGVQEGAI TPAGIVNKYE VNGLQAWLIT HFLWFVNAYL LSWFSPTIIF DNWIPLLWCA 180
  181 NILGYAVSTF AMIKGYLFPT SAEDCKFTGN FFYNYMMGIE FNPRIGKWFD FKLFFNGRPG 240
  241 IVAWTLINLS FAAKQQELYG HVTNSMILVN VLQAIYVLDF FWNETWYLKT IDICHDHFGW 300
  301 YLGWGDCVWL PYLYTLQGLY LVYHPVQLST PNALGVLLLG LVGYYIFRMT NHQKDLFRRT 360
  361 DGHCLIWGKK PKAIECSYTS ADGLKHRSKL LVSGFWGVAR HFNYTGDLMG SLAYCLACGG 420
  421 GHLLPYFYII YMTILLTHRC LRDEHRCANK YGRDWERYVA AVPYRLLPGI F