YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4126962, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.63
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSEQAEQP NQPSSSPGSE NVVPREPLIA TAVKFLQNSR VRQSPLATRR AFLKKKGLTD  60
   61 EEIDLAFQQS GTASDEPSPV GPATPVVPVQ PPHLISQPYS PGGSRWRDYG ALAIILAGIA 120
  121 FGFHQLYKKY LLPLILGGRE DRKQLERMAA SLSELSGSVA QTVTQVQTTL ASVQELLRQQ 180
  181 QQKVQELAHE LAAAKATTST NWILESQNIN ELKSEINSLK GLLLNRRQFP PSPSAPKIPS 240
  241 WQIPVKSPSP SSPAAVNHHS SSDISPVSNE SPSSSPGKDG HSPEGSTATY RLLGPQEEGE 300
  301 GVMDVKGQVR MEVQGEEEKR EDEEGEEDED DDVSHVDEED VLGVQREDRR GGDGQINEQV 360
  361 EKLRRPEGAS NESERD

Type	Start	End	Confidence
Cytoplasmic	1	108	0.55
Transmembrane Helix	109	127	0.59
Non-Cytoplasmic	128	376	0.94