YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HRH4_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSESNGTDVL PLTAQVPLAF LMSLLAFAIT IGNAVVILAF VADRNLRHRS NYFFLNLAIS  60
   61 DFFVGVISIP LYIPHTLFNW NFGSGICMFW LITDYLLCTA SVYSIVLISY DRYQSVSNAV 120
  121 RYRAQHTGIL KIVAQMVAVW ILAFLVNGPM ILASDSWKNS TNTEECEPGF VTEWYILAIT 180
  181 AFLEFLLPVS LVVYFSVQIY WSLWKRGSLS RCPSHAGFIA TSSRGTGHSR RTGLACRTSL 240
  241 PGLKEPAASL HSESPRGKSS LLVSLRTHMS GSIIAFKVGS FCRSESPVLH QREHVELLRG 300
  301 RKLARSLAVL LSAFAICWAP YCLFTIVLST YRRGERPKSI WYSIAFWLQW FNSLINPFLY 360
  361 PLCHRRFQKA FWKILCVTKQ PAPSQTQSVS S

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.96
Transmembrane Helix	18	41	0.93
Cytoplasmic	42	51	0.91
Transmembrane Helix	52	73	0.95
Non-Cytoplasmic	74	85	0.85
Transmembrane Helix	86	110	0.85
Cytoplasmic	111	127	0.94
Transmembrane Helix	128	151	0.87
Non-Cytoplasmic	152	177	0.92
Transmembrane Helix	178	201	0.88
Cytoplasmic	202	306	0.98
Transmembrane Helix	307	328	0.94
Non-Cytoplasmic	329	342	0.81
Transmembrane Helix	343	363	0.87
Cytoplasmic	364	391	0.94