YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1297194
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLLFVMVAGF VKGNVANWKI SEEFLKNISA SAREPPSENG TSIYGAGGFM PYGFTGTLAG  60
   61 AATCFYAFVG FDCIATTGEE VRNPQKAIPI GIVTSLLVCF MAYFGVSAAL TLMMPYYLLD 120
  121 EKSPLPVAFE YVGWGPAKYV VAAGSLCALS TSLLGSIFPM PRVIYAMAED GLLFKCLAQI 180
  181 NSKTKTPIIA TLSSGAVAAV MAFLFDLKAL VDMMSIGTLM AYSLVAACVL ILRYQPGLCY 240
  241 EQPKYTPEKD ILESCTNATS K

Type	Start	End	Confidence
Non-Cytoplasmic	1	51	0.91
Transmembrane Helix	52	75	0.81
Cytoplasmic	76	89	0.85
Transmembrane Helix	90	111	0.90
Non-Cytoplasmic	112	138	0.87
Transmembrane Helix	139	158	0.93
Cytoplasmic	159	185	0.85
Transmembrane Helix	186	205	0.93
Non-Cytoplasmic	206	212	0.74
Transmembrane Helix	213	234	0.88
Cytoplasmic	235	261	0.95